Selected Publications

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Year Paper Title
2007 S. Tu, E. M. Bulloch, L. Yang, C. Ren, W. C. Huang, P. S. Hsu, C. H. Chen, C. L. Liao, W. S. Lo, M. S. Freitas, M. D. Tsai, Identification of Histone Demethylases in Sacchromyces cerevisiae, J. Biol Chem, vol. 282(19), 14262-14271, 2007
2007 H. J. Huang, W. B. Yang, Synthesis of moenocinol and its analogs using BT-sulfone in Julia-Kocienski olefination, Tetrahedron Lett, vol. 48, 1429-1433, 2007
2007 Y. M. Shao, W. B. Yang, H. P. Peng, M. F. Hsu, K. C. Tsai, T. H. Kuo, A. S. Yang, A. H. J. Wang, P. H. Liang, C. H. Lin, C. H. Wong, Structure-Based Design and Synthesis of Highly Potent SARS-CoV 3CL Protease Inhibitors, ChemBioChem, vol. 8(14), 1654-1657, 2007
2007 N. Y. Hsu, W. B. Yang, C. H. Wong, Y. C. Lee, R. T. Lee, Y. S. Wang, C. H. Chen, Matrix-assisted laser desorption/ionization mass spectrometry of polysaccharides with 2',4',6'-trihydroxyacetophenone as matrix, Rapid Communications in Mass Spectrometry, vol. 21, 2137-2146, 2007
2007 W. C. Chang, L. C. L. Huang, Y. S. Wang, W. P. Peng, H. C. Chang, N. Y. Hsu, W. B. Yang, C. H. Chen, Matrix-assisted laser desorption/ionization (MALDI) mechanism revisited, Analytica Chimica Acta, vol. 582(1), 1-9, 2007
2007 K. C. Cheng, H. C. Huang, J. H. Chen, J. W. Hsu, H. C. Cheng, C. H. Ou1, W. B. Yang, S. T. Chen, C. H. Wong, H. F. Juan, Ganoderma lucidum polysaccharides in human monocytic leukemia cells: from gene expression to network construction, BMC Genomics, vol. 8, 411, 2007
2007 K. F. Hua, H. Y. Hsu, L. K. Chao, S. T. Chen, W. B. Yang, J. Hsu, C. H. Wong, Ganoderma lucidum Polysaccharides Enhance CD14 Endocytosis of LPS and Promote TLR4 Signal Transduction of Cytokine Expression, Journal of Cellular Physiology, vol. 212, 537-550, 2007
2007 Hanson SR, Hsu TL, Weerapana E, Kishikawa K, Simon GM, Cravatt BF, Wong CH, Tailored glycoproteomics and glycan site mapping using saccharide-selective bioorthogonal probes., Journal of the American Chemical Society, vol. 129(23), 7266-7267, 2007
2007 Hsu TL, Hanson SR, Kishikawa K, Wang SK, Sawa M, Wong CH, Alkynyl sugar analogs for the labeling and visualization of glycoconjugates in cells., Proceedings of the National Academy of Sciences of the United States of America, vol. 104(8), 2614-2619, 2007
2007 M. T. Naik, (C. F. Chang, I. C. Kuo, T. Yu, P. J. Fang, K. Y. Chua, T. H. Huang, Complete H-1, C-13 and N-15 resonance assignments of Blo t 5, a major mite allergen from Blomia tropicalis, J Biomol NMR, vol. 38(2), 189-189, 2007
2007 Wu HC, Wang Q, Wang LW, (Yang HI, Ahsan H, Tsai WY, Wang LY, Chen SY, Chen CJ, Santella RM, Urinary 8-oxodeoxyguanosine, aflatoxin B1 exposure and hepatitis B virus infection and hepatocellular carcinoma in Taiwan., CARCINOGENESIS, vol. 28(5), 995-999, 2007
2007 Iloeje UH, (Yang HI, Jen CL, Su J, Wang LY, You SL, Chen CJ, Risk and predictors of mortality associated with chronic hepatitis B infection., CLINICAL GASTROENTEROLOGY AND HEPATOLOGY, vol. 5(8), 921-931, 2007
2007 Zhang YJ, Wu HC, Shen J, Ahsan H, Tsai WY, (Yang HI, Wang LY, Chen SY, Chen CJ, Santella RM, Predicting hepatocellular carcinoma by detection of aberrant promoter methylation in serum DNA., CLINICAL CANCER RESEARCH, vol. 13(8), 2378-2384, 2007
2007 Wu HC, Wang Q, Wang LW, (Yang HI, Ahsan H, Tsai WY, Wang LY, Chen SY, Chen CJ, Santella RM, Polycyclic aromatic hydrocarbon- and aflatoxin-albumin adducts, hepatitis B virus infection and hepatocellular carcinoma in Taiwan., CANCER LETTERS, vol. 252(1), 104-114, 2007
2007 Chen CJ, Iloeje UH, (Yang HI, Long-term outcomes in hepatitis B: the REVEAL-HBV study., Clinics in Liver Disease, vol. 11(4), 797-816, 2007
2007 S. Sabu, F. C. Yang, Y. S. Wang, W. H. Chen, M. I. Chou, H. C. Chang, C. C. Han, Peptide analysis: Solid phase extraction-elution on diamond combined with atmospheric pressure matrix-assisted laser desorption/ionization-Fourier transform ion cyclotron resonance mass spectrometry, Anal Biochem, vol. 367, 190-200, 2007
2007 N. Y. Hsu, W. B. Yang, C. H. Wong, Y. C. Lee, R. T. Lee, Y. S. Wang, C. H. Chen, Matrix-assisted laser desorption/ionization mass spectrometry of polysaccharides with 2',4',6'-trihydroxyacetophenone as matrix, RAPID COMMUNICATIONS IN MASS SPECTROMETRY, vol. 21, 2137-2146, 2007
2007 W. C. Chang, L. C. L. Huang, Y.-S. Wang, W.-P. Peng, H.-C. Chang, N. Y. Hsu, W. B. Yang, C. H. Chen, Matrix-assisted laser desorption/ionization (MALDI) mechanism revisited, Analytica Chimica Acta, vol. 582, 1-9, 2007
2007 M.-H. Li, S.-T. Tsai, C.-H. Chen, C. W. Chen, Y. T. Lee, Y.-S. Wang, Bipolar Ion Detector Based on Sequential Conversion Reactions, Analytical Chemistry, vol. 79 (4), 1277-1282., 2007
2007 C.N. Shen, A. Petiot, C.Y. Chien, C. Dickson, J. M.W. Slack, D. Tosh, All-trans retinoic acid suppresses exocrine differentiation and branching morphogenesis in the embryonic pancreas, Differentiation, vol. 75, 62-74, 2007
2007 Lin, F.-R., Kuo, H.-K., Ying, H.-Y., Yang, F.-H., Lin, K.-I*), Induction of apoptosis in plasma cells by B lymphocyte-induced maturation protein-1 knockdown, CANCER RESEARCH, vol. 67(24), 11914-11923, 2007
2007 Y. S. Li, J. Y. Ho, C. C. Huang, S. Y. Lyu, C. Y. Lee, Y. T. Huang, C. J. Wu, H. C. Chan, C. J. Huang, N. S. Hsu, M. D. Tsai, T. L. Li*, A unique flavin mononucleotide-linked primary alcohol oxidase for glycopeptide A40926 maturation, JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, vol. 129, 13384-13385, 2007
2007 Feng-Chi, Chen; Chueng-Jong, Chen; (Trees-Juen, Chuang)*, INDELSCAN: a web server for comparative identification of species-specific and non-species-specific insertion/deletion events, Nucleic Acids Research, vol. 35(Web Server issue), W633-8 (impact factor: 8.278; ranking: 27/290: BIOCHEMISTRY & MOLECULAR BIOLOGY), 2007
2007 Feng-Chi Chen, Chueng-Jong Chen, Wen-Hsiung Li*, Trees-Juen Chuang*, Human-specific insertions and deletions inferred from mammalian genome sequences, Genome Research, vol. 17(1), 16-22 (impact factor: 14.397; ranking: 3/160: BIOTECHNOLOGY & APPLIED MICROBIOLOGY), 2007
2007 Feng-Chi Chen, Sheng-Shun Wang, Shu-Miaw Chaw, Yao-Ting Huang, Trees-Juen Chuang)*, PGAA: a plant genome annotation pipeline for rice gene and alternatively spliced variant identification with cross-species EST conservationfrom seven plant species, Plant Physiology, vol. 143(3), 1086-1095 (impact factor: 6.555; ranking: 8/195: PLANT SCIENCES), 2007
2007 Yun-Huei Tzeng, Wen-Hsiung Li, Trees-Juen Chuang*, Mathematical Properties of Some Measures of Evolutionary Distance, Journal of Theoretical Biology, vol. 245(4), 790-792, 2007
2007 Feng-Chi Chen, Shu-Miaw Chaw, Yun-Huei Tzeng, Sheng-Shun Wang, Trees-Juen Chuang*, Opposite Evolutionary Effects between Different Alternative Splicing Patterns, Molecular Biology and Evolution, vol. 24, 1443-1446 (impact factor: 10.353; ranking: 14/290: BIOCHEMISTRY & MOLECULAR BIOLOGY), 2007
2007 Feng-Chi Chen, Trees-Juen Chuang*, Different alternative splicing patterns are subject to opposite selection pressure for protein reading frame preservation., BMC Evolutionary Biology, vol. 7(1):179, 2007
2007 Lin YC, Diccianni MB, Kim Y, Lin HH, Lee CH, Lin RJ, Joo SH, Li J, (Chuang TJ, Yang AS, Kuo HH, Tsai MD, Yu AL, Human p16 , a novel transcriptional variant of p16INK4A, coexpresses with p16INK4A in cancer cells and inhibits cell-cycle progression, Oncogene, vol. 26(49), 7017-7027, 2007
2007 I. J. Wang, L. M. Huang, H. H. Chen, K. C. Hwang, C. J. Chen, Seroprevalence of rubella infection after national immunization program in Taiwan: Vaccination status and immigration impact, J Med Virol, vol. 79, 97-103, 2007