課程表
Monday 8/07
09:00-10:00 Keynote
10:00-10:30 Workshop introduction & logistics
10:30-12:00 NGS introduction up to alignment
12:00-13:00 Lunch break
13:00-14:00 Basic Unix
14:00-14:15 Break
14:15-15:30 Alignment
15:30-15:45 Break
15:45-17:00 Variant calling
Tuesday 8/08
09:00-10:30 Variance annotation
10:30-12:00 ChIP-Seq and RNA-Seq Fundamentals
12:00-13:00 Lunch break
13:00-14:30 Basic Genomic Data Analysis using R
14:30-14:40 Break
14:40-16:00 Basic Genomic Data Analysis using R
16:00-16:10 Break
16:10-17:00 Regulatory Network Analysis with GTEx Data
Wednesday 8/09
09:00-10:30 GWAS 1: Introduction
1. Introduction to GWAS
2. Study design
3. Genetic variations/QC/ imputation
10:30-10:45 Break
10:45-12:00 GWAS2:
GWAS association analysis: theory
1. Common variants association
2. Single variant meta-analysis
12:00-13:00 Lunch break
13:00-15:00 GWAS 3:
GWAS association analysis: practice
1. GWAS QC and association analysis
15:00-15:30 Break
15:30-17:00 GWAS 4:
1. Polygenic score prediction
2. Mendelian Randomization
Thursday 8/10
09:00-10:30 GWAS 5:
Advanced statistical analyses:
1. SNP-based heritability
2. SNP-based genetic correlation; LD Hub
10:30-10:45 Break
10:45-12:00 GWAS 6:
Rare variant association:
1. Single rare variant test
2. Bootstrat
3. Set-based rare variant test
4. De novo mutation
5. LOF
6. rareMETAL
12:00-13:00 Lunch break
13:00-14:30 Data Base:TCGA, GTEX, UKBIOBANK, etc….
14:30-15:00 Break
15:00-17:00 Epigenetics:
Introduction to epigenetics concepts mediation concepts
Friday 8/11
09:00-12:00 Methylations
1. Mediation analysis and repeated measurements
2. Case Study and Additional tools
12:00-13:00 Lunch break
13:00-14:30 Beyond Associations:
Functional Genomics/Cancer genomics
14:30-15:00 Break
15:00-17:00 Beyond Associations:
Hand-on Functional Genomics/Cancer genomics
聯絡人資訊：
胡惠涵 博士 (02)2789-8756
主辦單位：
中央研究院基因體研究中心
台灣流行病學學會
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